Zenker, Armin

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Armin
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Zenker, Armin

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  • Vorschaubild
    Publikation
    Sex blind. Bridging the gap between drug exposure and sex-related gene expression in Danio rerio using next-generation sequencing (NGS) data and a literature review to find the missing links in pharmaceutical and environmental toxicology studies
    (Frontiers Media, 16.06.2023) King, Alex C.; Zenker, Armin [in: Frontiers in Toxicology]
    The sex of both humans and Danio rerio has previously been shown to affect the way individuals respond to drug exposure. Genes which allow identification of sex in juvenile zebrafish show potential to reveal these confounding variables between sex in toxicological and preclinical trials but the link between these is so far missing. These sex-specific, early expressed genes where expression is not altered by drug exposure must be carefully selected for this purpose. We aimed to discover genes which can be used in pharmaceutical trials and environmental toxicology studies to uncover sex-related variations in gene expression with drug application using the model organism Danio rerio. Previously published early sex determining genes from King et al. were evaluated as well as additional genes selected from our zebrafish Next-generation sequencing (NGS) data which are known from previously published works not to be susceptible to changes in expression with drug exposure. NGS revealed a further ten female-specific genes (vtg1, cyp17a1, cyp19a1a, igf3, ftz-f1, gdf9, foxl2a, Nr0b1, ipo4, lhcgr) and five male related candidate genes (FKBP5, apobb1, hbaa1, dmrt1, spata6) which are also expressed in juvenile zebrafish, 28 days post fertilisation (dpf). Following this, a literature review was performed to classify which of these early-expressed sex specific genes are already known to be affected by drug exposure in order to determine candidate genes to be used in pharmaceutical trials or environmental toxicology testing studies. Discovery of these early sex-determining genes in Danio rerio will allow identification of sex-related responses to drug testing to improve sex-specific healthcare and the medical treatment of human patients.
    01A - Beitrag in wissenschaftlicher Zeitschrift
  • Vorschaubild
    Publikation
    Large‐scale eDNA monitoring of multiple aquatic pathogens as a tool to provide risk maps for wildlife diseases
    (Wiley, 11.05.2023) Sieber, Natalie; King, Alex; Krieg, Raphael; Zenker, Armin; Vorburger, Christoph; Hartikainen, Hanna [in: Environmental DNA]
    Multiple parasites and pathogens cause disease in aquatic wildlife and in aquaculture species, generating a need for monitoring and management. Conventional disease monitoring methods involve laborious, costly, and invasive capture and examination of host species, and require specialized expertise for every host and pathogen of interest. Environmental DNA could provide simultaneous occurrence data for multiple pathogens across different host taxa, valuable for using parasite diversity as, for example, a bioindicator of ecosystem disturbance. Here, we tested the potential for simultaneous detection of four wildlife pathogens in water samples from 280, mainly riverine, sites across Switzerland. We targeted the crayfish pathogen, the amphibian pathogen Batrachochytrium dendrobatidis, and the fish pathogens Saprolegnia parasitica and Tetracapsuloides bryosalmonae. The eDNA detection showed a widespread distribution of A. astaciS. parasitica T. bryosalmonae A. astaci and T. bryosalmonae were not detected in some alpine river catchments. B. dendrobatidis was detected only rarely, which was expected since the sampling did not target amphibian breeding sites. Co‐detection rates were higher in rivers than in lakes, likely reflecting the habitat preferences and distributions of the host species. We discuss the advantages and limitations of eDNA‐based pathogen monitoring and list a set of recommendations for managers. Our study illustrates how eDNA‐based techniques can monitor several pathogen species concurrently, thus facilitating more comprehensive disease monitoring schemes. Combined with metabarcoding approaches in the future, eDNA‐based sampling and detection can facilitate the incorporation of parasite and pathogen occurrence and diversity as an indicator for aquatic ecosystem health, and for revealing the hidden biodiversity and structure of parasite communities.
    01A - Beitrag in wissenschaftlicher Zeitschrift
  • Vorschaubild nicht verfügbar
    Publikation
    Physiological dependency explains temperature differences in sensitivity towards chemical exposure
    (Springer, 20.10.2022) Rakel, Kim; Becker, Denis; Bussen, Dino; Classen, Silke; Preuss, Thomas; Strauss, Tido; Zenker, Armin; Gergs, André [in: Archives of Environmental Contamination and Toxicology]
    In chemical risk assessment, extrapolations from laboratory tests to more realistic conditions are essential to address the toxic effects of pesticides on individuals and populations under field conditions. To transfer toxicological laboratory tests to differing temperature conditions, or outdoor field scenarios, the consideration of temperature dependence is essential and increases realism. Special consideration is given to the impact of temperature on direct sensitivity of organisms to pesticides, for which there are only few modelling approaches available so far. We present a concept for applying physiological temperature dependencies to toxicokinetic–toxicodynamic (TKTD) parameters in the General Uniformed Threshold model of Survival (GUTS). To test this approach in an exemplary study, temperature dependencies from studies on the developmental rate of the mayfly Cloeon dipterum were applied to the parameters of a previously parameterised TKTD model of this species after exposure to imidacloprid. Using a physiologically derived temperature correction for the TKTD rate constants, model predictions for independently conducted toxicology experiments with temperature ranges between 7.8 and 26.4 °C were performed for validation. Our approach demonstrates the successful transfer of a physiological observed temperature dependency on toxicity parameters and survival patterns for Cloeon dipterum and imidacloprid as a case study.
    01A - Beitrag in wissenschaftlicher Zeitschrift
  • Vorschaubild
    Publikation
    Using eDNA to simultaneously detect the distribution of native and invasive crayfish within an entire country
    (Elsevier, 2022) Krieg, Raphael; Weston, Anna; Zenker, Armin; King, Alex [in: Journal of Environmental Management]
    The introduction of invasive crayfish has led to a decline of many European native species of crayfish across their range. In this study, novel duplex assays for all crayfish occurring in Switzerland were developed. We aimed to identify the distribution of the seven species using a traditional trap surveillance method as well by collecting water samples to detect eDNA by species-specific quantitative real-time PCR. We reveal our overall experience in finding optimal field and laboratory techniques to discover the distribution and abundance of native and invasive species in order to enhance knowledge of early invasive species invasion and highlight important pockets of populations where native species remain, for implementation of conservation strategies. Using eDNA, important populations of native noble and white-clawed crayfish were revealed in multiple waters across various cantons. The successful identification of native and invasive crayfish species in Switzerland using eDNA can be applied to future nationwide projects. This method which has the ability to detect all species simultaneously across an entire country, will allow an improvement in freshwater crayfish conservation management.
    01A - Beitrag in wissenschaftlicher Zeitschrift
  • Vorschaubild
    Publikation
    Parasite DNA detection in water samples enhances crayfish plague monitoring in asymptomatic invasive populations
    (Springer, 01.11.2021) Sieber, Natalie; Hartikainen, Hanna; Krieg, Raphael; Zenker, Armin; Vorburger, Christoph [in: Biological Invasions]
    Invasive species can facilitate the spread of pathogens by first providing asymptomatic host reservoirs, and then driving disease outbreaks in native populations through pathogen spillover. An example of this are invasive crayfish species in Europe (Faxonius limosus, Pacifastacus leniusculus, Procambarus clarkii), which carry the deadly plague agent (Aphanomyces astaci). Effective disease management requires comprehensive monitoring, however, pathogen detection in carrier populations with low pathogen prevalence and intensities is challenging. We simultaneously collected and analysed crayfish tissue samples of invasive crayfish populations and water samples to compare A. astaci detection in different sample types using quantitative PCR. Combined, the two sampling methods revealed A. astaci presence with DNA concentrations above limit of detection (LOD; the lowest concentration which can be detected with reasonable certainty) in 13 of 23 invasive crayfish populations. In four additional sites, A. astaci DNA concentrations below LOD were found in water. In four populations only were A. astaci concentrations above LOD detected in both sample types and in three populations in concentrations above LOD in tissue but below LOD in water. The likely reason for these discrepancies is the low A. astaci prevalence and concentration in resistant invasive crayfish, which limit detection reliability. Consistency may be improved by timing surveys with seasonal periods of high A. astaci abundance and by increasing water sampling effort. Considering the ease of collecting eDNA samples, compared to crayfish tissue sampling, eDNA methods would facilitate frequent and comprehensive surveys. However, remaining uncertainties in eDNA-based detection reveal the relevance of combining monitoring tools to improve detection of invasive pathogens and their management.
    01A - Beitrag in wissenschaftlicher Zeitschrift
  • Vorschaubild
    Publikation
    Barriers against invasive crayfish species in natural waters and fish passes. Practical experience
    (Elsevier, 01/2021) Krieg, Raphael; King, Alex; Zenker, Armin [in: Global Ecology and Conservation]
    The spread of non-indigenous crayfish species poses a threat to local populations of crayfish as well as to other fauna and flora across Europe and around the world. Several methods have been used in attempt to reduce their numbers and stop their further spread. Crayfish barriers are the best way to stop the non-anthropogenic spread of established invasive crayfish populations. Up to now there are very few published papers regarding crayfish barrier design and practical experience in construction. For the last seven years, we have optimised construction and functionality of crayfish barriers, tested various building materials and planned construction of many barriers across Switzerland. In this article, we highlight our experience, share the acquired knowledge and present the newest findings regarding considerations, which must be made when planning a barrier to stop the upstream movement of non-indigenous crayfish species. From our experience we conclude that crayfish barriers work in preventing the movement of invasive species if certain factors are taken into account. Barrier design and construction must be specific for each project, because the size of the watercourse, flow velocity, bank conditions, existing constructions and accessibility, all change the way a barrier should be set-up.
    01A - Beitrag in wissenschaftlicher Zeitschrift
  • Vorschaubild
    Publikation
    Measures to control invasive crayfish species in Switzerland: A success story?
    (Frontiers, 09.12.2020) Krieg, Raphael; King, Alex; Zenker, Armin [in: Frontiers in Environmental Science]
    01A - Beitrag in wissenschaftlicher Zeitschrift
  • Vorschaubild nicht verfügbar
    Publikation
    Shedding new light on early sex determination in zebrafish
    (Springer, 25.09.2020) King, Alex; Zenker, Armin; Gut, Michelle [in: Archives of Toxicology]
    In contrast to established zebrafish gene annotations, the question of sex determination has still not been conclusively clarified for developing zebrafish, Danio rerio, larvae, 28 dpf or earlier. Recent studies indicate polygenic sex determination (PSD), with the genes being distributed throughout the genome. Early genetic markers of sex in zebrafish help unravel co-founding sex-related differences to apply to human health and environmental toxicity studies. A qPCR-based method was developed for six genes: cytochrome P450, family 17, subfamily A, polypeptide 1 (cyp17a1); cytochrome P450, family 19, subfam-ily A, polypeptide 1a (cyp19a1a); cytochrome P450, family 19, subfamily A, polypeptides 1b (cyp19a1b); vitellogenin 1 (vtg1); nuclear receptor subfamily 0, group B, member 1 (nr0b1), sry (sex-determining region Y)-box 9b (sox9b) and actin, beta 1 (actb1), the reference gene. Sry-box 9a (Sox9a), insulin-like growth factor 3 (igf3) and double sex and mab-3 related transcription factor 1 (dmrt1), which are also known to be associated with sex determination, were used in gene expression tests. Additionally, Next-Generation-Sequencing (NGS) sequenced the genome of two adult female and male and two juve-niles. PCR analysis of adult zebrafish revealed sex-specific expression of cyp17a1, cyp19a1a, vtg1, igf3 and dmrt1, the first four strongly expressed in female zebrafish and the last one highly expressed in male conspecifics. From NGS, nine female and four male-fated genes were selected as novel for assessing zebrafish sex, 28 dpf. Differences in transcriptomes allowed allocation of sex-specific genes also expressed in juvenile zebrafish
    01A - Beitrag in wissenschaftlicher Zeitschrift
  • Vorschaubild nicht verfügbar
    Publikation
    A review of the use of physical barriers to stop the spread of non-indigenous crayfish species
    (Springer, 04.06.2020) Krieg, Raphael; Zenker, Armin [in: Reviews in Fish Biology and Fisheries]
    Invasive non-indigenous crayfish species (NICS) are a global threat to local flora and fauna. Total eradication of an entire population of invasive NICS is a difficult task; several methods have been tested and are still being used, with varying success. Most methods reduce population size and control the species within the targeted area but do not majorly prevent further spread of NICS. However, construction of crayfish barriers can stop the spread of NICS and can therefore, be used to protect indigenous crayfish species (ICS). There are currently very few published scientific papers about this topic. This review reflects current knowledge on how to stop migration when NICS are established and provides useful information for the construction of barriers. The most important findings related to building a crayfish barrier are: the need for a vertical wall with an overhanging lip above the water surface; smooth sections to prevent crayfish from walking or climbing over the obstacle, combined with flow velocities of 0.65 m/s act as a barrier within the waterbody. Additionally, modifications to existing structures, bridges, culverts and dams reduce costs and increase effectiveness in stopping upstream migration of NICS. Barriers can negatively impact certain aquatic species, mainly benthic and slow swimming fish by preventing their migration and genetic exchange. However, they can have positive impacts for ICS and other indigenous organisms against the negative effects of NICS. Local legislation should support barrier construction to prevent the spread of invasive crayfish and other aquatic invaders to protect ark sites for ICS.
    01A - Beitrag in wissenschaftlicher Zeitschrift
  • Vorschaubild nicht verfügbar
    Publikation
    AhR-Mediated Effects of Dioxins on liver in zebrafish embryos
    (11/2018) Yan, Lu; Zenker, Armin; Suter-Dick, Laura
    06 - Präsentation